OK fixed that bug preventing 20 from showing, and updated theme Ozone now at 1.1.3. The extra links feature was already added on the last update.
Yup you are right it's not working.The shortcodes were an attempt to circumvent the option engine in PageLines from stripping out html, but it seems it's still doing so. Unfortunately there's nothing I can do about this. Wordpress doesn't save "hard data" to the database from these options.
*Edit* Enter the url in the shortcode without quotes, seems to work.
Portfolio in IE9
Anything under IE10 isn't supported in this section. I've already been through and have searched for workarounds but not spenign any more time with that browser. I've already altered a few things for IE to make it less painful, but not doing anymore. What I recommend is making that project panel a solid white color to hide the other project thumbs that fail to stay in place when the drawer opens. You can add this CSS to change that.